PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g062250.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 296aa    MW: 33476.7 Da    PI: 7.7252
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g062250.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.4e-06137156120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++C+ C k+F+r  nL+ H+
  Csa17g062250.1 137 FSCHVCFKTFNRYNNLQMHM 156
                     89*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.59E-5118159No hitNo description
PROSITE profilePS5015710.055137164IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.4E-4137156IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280139159IPR007087Zinc finger, C2H2
SuperFamilySSF576675.41E-5206241No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MESPQYEISS SSSSEKPRNH FQPLDLFPNL HQNSCNNSTL IEPLPLIDWI NLNSNPNPLY  60
ADEGEEEDEE DDVEVDVDLH IGLPGFGKSG NGAKQPKKRN GKEIVTYDAG KDIENEVSGK  120
AYWIPAPEQI LIGFTHFSCH VCFKTFNRYN NLQMHMWGHG SQYRKGPESL KGTQPRAMLG  180
IPCYCCVEGC RNHIDHPRSK PLKDFRTLQT HYKRKHGHKP YSCRICGKLL AVKGDWRTHE  240
KNCGKRWVCV CGSDFKHKRS LKDHVKAFGT GHGPYPTGLF DEQASNSSVS ETLFF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304770.0AJ630477.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At1g34790.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010478920.10.0PREDICTED: protein TRANSPARENT TESTA 1-like
SwissprotQ8VWG30.0TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBLQ700E70.0Q700E7_ARATH; At1g34790
STRINGAT1G34790.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34790.10.0C2H2 family protein